Sunday, August 25, 2013

BIOS 208. Chapter 1. Introduction: Themes in the Study of Life

BIOS 208/210: Fundamentals of Cell Biology
Chapter 1: Introduction: Themes in the Study of Life

Key Concepts

1.1)            The themes of this book make connections across different areas of biology.
·         Theme: New properties emerge at each level in the biological hierarchy.
o   The hierarchy of life unfolds as follows:
§  Biosphere
§  Ecosystem
§  Community
§  Population
§  Organism
§  Organ System
§  Organ
§  Tissue
§  Cell
§  Organelle
§  Molecule
§  Atom
o   With each step upward from atoms, new properties emerge as a result of interactions among components at the lower levels. In an approach called reductionism, complex systems are broken down to simpler components that are more manageable to study.
o   In systems biology, scientists attempt to model the dynamic behavior of whole biological systems based on a study of the interactions among the system’s parts.
·         Theme: Organisms interact with other organisms and the physical environment.
o   Plants take up nutrients from the soil and chemicals from the air and use energy from the sun. Interactions between plants and other organisms result in cycling of chemical nutrients within an ecosystem. One harmful outcome of human interactions with the environment has been global climate change, caused by burning of fossil fuels and increasing atmospheric CO2.
·         Theme: Life requires energy transfer and transformation
o   Energy flow through an ecosystem. All organisms must perform work, which requires energy. Energy from sunlight is converted to chemical energy by producers, which is then passed on to consumers.





·         Theme: Structure and function are correlated at all levels of biological organization.
o   The form of biological structure suits its function and vice versa.
·         Theme: The cell is an organism’s basic unit of structure and function.
o   The cell is the lowest level of organization that can perform all activities required for life.
o   Cells are either prokaryotic or eukaryotic. Eukaryotic cells contain membrane-enclosed organelles, including a DNA-containing nucleus. Prokaryotic cells lack such organelles.
·         Theme: The continuity of life is based on heritable information in the form of DNA.
o   Genetic information is encoded in the nucleotide sequences of DNA. It is DNA that transmits heritable information from parents to offspring.
o   DNA sequences program a cell’s protein production by being transcribed into RNA and then translated into specific proteins, a process called gene expression. Gene expression also results in RNAs that are not translated into protein but serve other important functions.
o   Genomics is the large-scale analysis of the DNA sequences within a species as well as the comparison of sequences between species.
·         Theme: Feedback mechanisms regulate biological systems.
o   In negative feedback, accumulation of an end product slows the process that makes the product.
o   In positive feedback, the end product stimulates the production of more product.
o   Feedback is a type of regulation common to life at all levels, from molecules to ecosystems.
·         Theme: Evolution, the Overreaching Theme of Biology
o   Evolution accounts for the unity and diversity of life and also for the match of organisms to their environments.

1.2)            The Core Theme: Evolution accounts for the unity and diversity of life.
·         Biologists classify species according to a system of broader and broader groups. Domain Bacteria and Doman Archaea consist of prokaryotes. Domain Eurkarya, the eukaryotes, include various groups of protists and the kingdoms Plantae, Fungi, and Animalia. As diverse as life is, there is also evidence of remarkable unity, which is revealed in the similarities between different kinds of organisms.
·         Darwin proposed natural selection as the mechanism for evolutionary adaptation of populations to their environments.
·         Each species is one twig of a branching tree of life extending back in time through ancestral species more and more remote. All of life is connected through its long evolutionary history.


1.3)            In studying nature, scientists make observations and then form and test hypotheses.
·         In scientific inquiry, scientists make observations (collect data) and use inductive reasoning to draw a general conclusion, which can be developed into a testable hypothesis. Deductive reasoning makes predictions that can be used to test hypotheses: If a hypothesis is correct, and we test it, then we can expect the prediction to come true. Hypotheses must be testable and falsifiable; science can address neither the possibility of supernatural phenomena nor the validity of religious beliefs.
·         Controlled experiments, such as the study investigating mimicry in snake populations, are designed to demonstrate the effect of one variable by testing control groups and experimental groups that differ in only one variable.
·         A scientific theory is broad in scope, generates new hypotheses, and is supported by a large body of evidence.

1.4)            Science benefits from a cooperative approach and diverse viewpoints.
·         Science is a social activity. The work of each scientist builds on the wok of others that have come before. Scientists must be able to repeat each other’s results, so integrity is key. Biologists approach questions at different levels; their approaches complement each other.
·         Technology is a method or device that applies scientific knowledge for some specific purpose that affects society. The ultimate impact of basic research is not always immediately obvious.
·         Diversity among scientists promote progress in science.


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